Please report issues and bugs with Minirosetta v1.39 in this thread. In this update, we added two important applications, protein docking and protein folding with explicit metal ions. From the graphics, you probably can tell them by a structure with two different chain colors and a protein folding around a colored sphere, respectively. See the Rosett@home science section for more descriptions on these projects.

---

Well, I did wonder why the date of the newspost was June 10th.....but apart from that, it seems to work fine.

Well, I did wonder why the date of the newspost was June 10th.....but apart from that, it seems to work fine.

Nice catch.


I haven't gotten the app yet (Actually, I did but I have a bazillion WU left before it reaches the 1.39s)

---

Please, please, please notify us of new versions in
Rosetta Application Version Release Log.

---

30.10.2008 1:46:22|rosetta@home|Computation for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 finished
30.10.2008 1:46:22|rosetta@home|Output file abinitio_nohomfrag_70_A_1t2iA_4466_68269_0_0 for task abinitio_nohomfrag_70_A_1t2iA_4466_68269_0 absent

Last days I saw such a bug also in ralph's minirosetta 1.39

As with the last couple of mini rosetta versions I've got several pages of results with nothing but WU failures, but on the rare occasion where the BOINC client sees fit to send rosetta 5.98 WUs those process just fine.

See results: https://boinc.bakerlab.org/rosetta/results.php?userid=254884

Whats up with this? All of these tasks failed in the 1st 5 seconds have I done something wrong?

---

Have a crunching good day!!

Hi Speedy.

application version 1.02

I don't think i've seen this app version here before!

lucky you. ;) or not.

pete.

---

Hi Speedy.

application version 1.02

I don't think i've seen this app version here before!

lucky you. ;) or not.

pete.

Hi Pete

you are right about lucky me or not. Hope you are well

---

Have a crunching good day!!

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185612716
This workunit just stopped immediately after it started it's computation.

https://boinc.bakerlab.org/rosetta/workunit.php?wuid=185409243
This work unit had a similar problem, only it ran for 40 seconds.

Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:17:12 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:18:02 AM EDT||request_reschedule_cpus: process exited
...

Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc.

Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:17:12 AM EDT||request_reschedule_cpus: process exited
Thu 30 Oct 2008 06:17:12 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:18:02 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:18:02 AM EDT||request_reschedule_cpus: process exited
...

Howdy,
I had the same kind of (?) problem with Windows XP, there were sam ekind of messages like:

10/30/2008 10:12:49 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:12:49 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:14:07 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:14:07 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:14:07 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:15:18 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:15:18 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:15:18 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:16:23 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:16:23 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:16:23 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:17:28 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:17:28 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:17:29 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:18:34 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:18:34 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:18:34 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:19:37 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:19:37 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:19:38 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:20:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:20:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:20:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:21:39 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:21:39 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:21:39 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:22:40 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:22:40 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.
10/30/2008 10:22:41 PM|rosetta@home|Restarting task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 using minirosetta version 139
10/30/2008 10:23:41 PM|rosetta@home|Task relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00005_0000887_0_test_2.0.out_4655_1_1 exited with a DLL initialization error.
10/30/2008 10:23:41 PM|rosetta@home|If this happens repeatedly you may need to reboot your computer.

.. So I aborted this WU ..

-- Lundi --

---

Hmm. It was buggy even while being a ralph. And now I still have a problems with 1.39:

10/31/08 01:06:24|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:08:25|ralph@home|Sending scheduler request: To fetch work. Requesting 27367 seconds of work, reporting 0 completed tasks
10/31/08 01:08:36|ralph@home|Scheduler request completed: got 0 new tasks
10/31/08 01:08:38|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:10:52|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:13:13|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:15:32|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:17:51|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:19:03|lhcathome|Sending scheduler request: To fetch work. Requesting 81986 seconds of work, reporting 0 completed tasks
10/31/08 01:19:08|lhcathome|Scheduler request completed: got 0 new tasks
10/31/08 01:20:06|rosetta@home|Restarting task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 using minirosetta version 139
10/31/08 01:20:26|rosetta@home|Computation for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 finished
10/31/08 01:20:26|rosetta@home|Output file abinitio_nohomfrag_70_A_2h28A_4466_96316_1_0 for task abinitio_nohomfrag_70_A_2h28A_4466_96316_1 absent

WinXP x64, BOINC 6.3.19

Thanks for posting, we've fixed that bug now! will be updating ralph and boinc in a few days.

[quote][quote]Had a problem with this WU on one of my Linux systems:

relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0

It kept restarting about once a minute. It had been doing this for about 8 hours so I aborted it. Boinc manager showed the CPU time being reset to zero with each restart.

The stdout.txt file had grown to around 14MB. It had a lot of messages about inflating files, which repeateed with each restart.

The Boinc messages tab showed a very large number of messages like:

...
Thu 30 Oct 2008 06:15:31 AM EDT|rosetta@home|Restarting result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 using minirosetta version 139
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|Result relax_lbench_mtyka_large_test2_1a32_IGNORE_THE_REST_S_00011_0001004_0_test_10.0.out_4655_1_0 exited with zero status but no 'finished' file
Thu 30 Oct 2008 06:16:22 AM EDT|rosetta@home|If this happens repeatedly you may need to reset the project.
Thu 30 Oct 2008 06:16:22 AM EDT||request_reschedule_cpus: process exited

---

http://beautifulproteins.blogspot.com/
http://www.miketyka.com/

Hi,

I'm pretty new here, yet my 1st report. :]

Task ID 203599248, WU ID 185962994, Win XP Pentium M machine.
I've got a computational error with following description:
"(...)ERROR: in::file::zip minirosetta_database.zip does not exist!(...)"

I have taken a look for such a file and it is non-existant. However, in C:Documents and SettingsAll UsersApplication DataBOINCprojectsboinc.bakerlab.org_rosetta
I found a minirosetta_database_rev25321 file with a minirosetta_database folder inside.

It looks like a mismatch between expected and actual name of the file.
So far I've copied the (...)_rev25321 file and renamed a copy to minirosetta_database. Hope it will work next time. If it runs, I will halt it and wait for your feedback to avoid any messing with the data.

EDIT: Copy trick did not work. The second WU got a "computational error" (Task ID 203661162) with the same description. Both were of a CASP8 type - I didn't have any such before.

EDIT2: Seems to be the same as a report in a massage 56524 above and other similar.

P.S. I've noticed that graphical Rosetta application occasionally shuts down. You need to restart it and goes all right.
P.S.S. Second thing is that BOINC install wizard makes a couple of strange things, like creating a boinc_master folder in Documents and Settings. The folder does not hold any BOINC data (as I may see) however duplicates some previously existing data from personal folders. I know this is not your application, however it might potentially mess with file locations.

I hope I will help somehow. :)
Best regards.

Minirosetta seems to finish it's work, but when I come home I have, literally, 181 processes running and 153 are minirosetta-related, most of them graphics. Plus, my computer is locked up and I have to either end ALL of the rosetta processes, plus a few others, or just reboot. This has never happened before. Do I need to disable my screensaver or download directx 10 compatibility? I am running XP, 2 gigahertz, 1 gb ram, plenty o' disk space, boinc client v 5.8.15. Should I update my boinc client? Your v 1.32 said it supported a lower version of boinc.

I don't know, but so far I've always used BOINC 5.10.45, as the WCG site requests for people also working on their projects.

Well, I took the plunge and updated my Boinc manager to v 6.2.19. I was afraid that projects wouldn't attach properly and/or other glitches but everything went extremely smoothly and mini-rosetta seems to work fine now. I did uninstall the old Boinc manager first and close out all unecessary programs.

I've got multiple machines erroring out WUs immediately with the following stdout:


<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>


They're not able to get any more work. These are reliable, non-overclocked, HP Quads (Q6600) with 3 GB of memory each, running Vista Home Premium SP1 32 bit with all patches current.

---

Have you read a good Science Fiction book lately?

<core_client_version>6.2.19</core_client_version>
<![CDATA[
<message>
Incorrect function. (0x1) - exit code 1 (0x1)
</message>
<stderr_txt>

ERROR: in::file::zip minirosetta_database.zip does not exist!
ERROR:: Exit from: ....srcappspublicboincminirosetta.cc line: 74
called boinc_finish

</stderr_txt>
]]>


This seems to be a problem with the client Rosetta Mini with new score terms.
I had 17 tasks of this type during Oct 31 and they all errored out after just
a few secs. Problems are reported under Rosetta Mini with new score terms and
Rosetta Mine with new score terms 1.02. Probably why they are not sending out
new WUs. Strangely enough there is no info from the project.

Just got a new task using the same client. But, time to completion 7:44:52.
Darn, it errored out immediately.