Multiple 5.81 - BOINC_SYMM_FOLD_AND_DOCK_RELAX - crystal_foldanddock errors

Message boards : Number crunching : Multiple 5.81 - BOINC_SYMM_FOLD_AND_DOCK_RELAX - crystal_foldanddock errors

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Profile Greg_BE
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Message 49046 - Posted: 25 Nov 2007, 15:45:28 UTC

Task ID 120759419
Name 2o1j__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2o1j_-crystal_foldanddock__2257_52259_0
Workunit 109763138

Task ID 120871488
Name 1rop__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1rop_-crystal_foldanddock__2257_53957_0
Workunit 109865577

Task ID 120906051
Name 1rop__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1rop_-crystal_foldanddock__2257_55234_0
Workunit 109897502

Task ID 120962789
Name 2h3r__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2h3r_-crystal_foldanddock__2257_57266_0
Workunit 109950311

Task ID 120981194
Name 2zta__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2zta_-crystal_foldanddock__2257_57947_0
Workunit 109967342

Task ID 121041704
Name 1utx__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1utx_-crystal_foldanddock__2257_59358_0
Workunit 110022604

Task ID 121081182
Name 2h3r__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2h3r_-crystal_foldanddock__2257_60811_0
Workunit 110058936

Task ID 121099618
Name 2bti__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2bti_-crystal_foldanddock__2257_61490_0
Workunit 110075908

Task ID 121127694
Name 2bti__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2bti_-crystal_foldanddock__2257_62529_0
Workunit 110101883

Task ID 121141134
Name 2bti__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2bti_-crystal_foldanddock__2257_63031_0
Workunit 110114433

Task ID 121159758
Name 2o1j__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2o1j_-crystal_foldanddock__2257_63728_0
Workunit 110131705

Task ID 121193965
Name 2p64__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2p64_-crystal_foldanddock__2257_64247_1
Workunit 110143645

Task ID 121216252
Name 2bti__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2bti_-crystal_foldanddock__2257_66020_0
Workunit 110184416

Task ID 121225139
Name 2or1__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2or1_-crystal_foldanddock__2257_66379_0
Workunit 110192680

Task ID 121278672
Name 1g6u__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1g6u_-crystal_foldanddock__2257_19598_1
Workunit 108010485

Task ID 121280215
Name 1utx__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1utx_-crystal_foldanddock__2257_68568_0
Workunit 110243016

Task ID 121302462
Name 1fe6__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1fe6_-crystal_foldanddock__2257_69456_0
Workunit 110263434

Task ID 121337035
Name 1c26__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1c26_-crystal_foldanddock__2257_64658_0
Workunit 110295265

Task ID 121364463
Name 2o1j__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2o1j_-crystal_foldanddock__2257_71920_0
Workunit 110320121

Task ID 121373245
Name 1igu__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1igu_-crystal_foldanddock__2257_72269_0
Workunit 110328135

Task ID 121402719
Name 2nzc__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2nzc_-crystal_foldanddock__2257_73443_0
Workunit 110355149

Task ID 121435924
Name 2akf__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2akf_-crystal_foldanddock__2257_74784_0
Workunit 110385987

Task ID 121468476
Name 2or1__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2or1_-crystal_foldanddock__2257_76079_0
Workunit 110415780

Task ID 121488464
Name 1rop__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1rop_-crystal_foldanddock__2257_76852_0
Workunit 110433547

Task ID 121546658
Name 2zta__BOINC_SYMM_FOLD_AND_DOCK_RELAX-2zta_-crystal_foldanddock__2257_79158_0
Workunit 110486599


Outcome Client error
Client state Compute error
Exit status -185 (0xffffff47)

core_client_version>5.10.28</core_client_version>
<![CDATA[
<message>
Can't link input file
</message>
]]>
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Path7

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Message 49049 - Posted: 25 Nov 2007, 17:18:57 UTC

Hi Greg,

Some bad luck...
I'm surprised to see your Boinc is still using the Rosetta 5.81. In my Boinc sub folder, all applications I can find are the Rosetta 5.82 & Rosetta_beta 5.85.

I'm too much of a newbie to tell which step to take next.

Good luck!
Path7.

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Profile Greg_BE
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Message 49051 - Posted: 25 Nov 2007, 18:09:20 UTC - in response to Message 49049.  

well if you get any of the below tasks you can try them out or abort them.
maybe your computer comes up with something different.

if you get any of the _1 stuff that i have listed, that defiantly an abort. since two computers tried them and both suffered errors.

Hi Greg,

Some bad luck...
I'm surprised to see your Boinc is still using the Rosetta 5.81. In my Boinc sub folder, all applications I can find are the Rosetta 5.82 & Rosetta_beta 5.85.

I'm too much of a newbie to tell which step to take next.

Good luck!
Path7.




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Tom Philippart
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Message 49066 - Posted: 26 Nov 2007, 16:24:31 UTC - in response to Message 49051.  

According to the Boinc FAQ, the -185 error means:

This is an error that will occur when:
- if BOINC couldn't start the application
- if files are missing
- catch other error returns
- on nonzero exit or signal
- if exceeded resource limit
- catch-all for resume/start errors


I would detach, delete the rosetta project folder (normally located here: C:Program FilesBoincprojects) and then attach to the project again.
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Profile dcdc

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Message 49067 - Posted: 26 Nov 2007, 17:47:08 UTC

greg, do you have a fixed-size page file?

if so, it might be that rosetta is filling it and then crashing...
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Luuklag

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Message 49071 - Posted: 26 Nov 2007, 18:15:19 UTC

erm maybe you should read some more at the forum. in the porblems with topics it says, all symm fold and dock relax 2257 have been cancelede from the queque du to high error rates.... so just remove them and crunch something else :)
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Message 49076 - Posted: 26 Nov 2007, 20:06:05 UTC

it's not just those ones that are VM hogs - i think it's 5.85 that's the problem.
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Message 49081 - Posted: 26 Nov 2007, 21:22:15 UTC
Last modified: 26 Nov 2007, 21:24:24 UTC

dcdc - no fixed page file size, all settings are default minus swap file space which i gave it part of a large unused partition of my e: drive to use.
if it was a virtual memory issue wouldn't it say something like that in the error messages either in the boinc manager log or in the outcome status report?

luuklag - i also had some 2318 stuff that went the same way that i missed putting in here in my list. 1uis__BOINC_SYMM_FOLD_AND_DOCK_RELAX-1uis_-crystal_foldanddock__2318_52078_0
-185 (0xffffff47) - can't link input file

also for instance something not related to crystalfoldanddock:
w007_1_MolecularRep_1_w007_1_ffas03-1-2b0v_StructuralGenomics_a_2325_7744_0
same story

you will also see I posted a bunch of other stuff in a seperate 5.82 and 5.85 threads (see my list in the 5.85 thread) as well also with the same 185 error and it was not just crystalfold although that makes up the majority of the compute errors i have.

i lost 20 credits in that mess as well as wasted compute time. really annoys me that someone did not check the tasks before they were released. I was on the way to rebuilding my RAC after some other problems when this crashed and burned.

any other ideas other than missing info from what the log output says?
what exactly does can't link to input file mean?

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Luuklag

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Message 49102 - Posted: 27 Nov 2007, 17:45:24 UTC - in response to Message 49081.  

but you do have some right wu's otherwise a deatach deinstall reinstall reattach would seam the solution.
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Message 49107 - Posted: 27 Nov 2007, 18:24:07 UTC - in response to Message 49102.  

now that this bad batch has passed through, everything is back to normal.
ive been running 1ubi filters with no problem and the crystalfoldanddock with fragment 2257 seem to run ok now. must have been just those particular tasks or part of the file name thing that was going on. life seems to be back to normal now.

but you do have some right wu's otherwise a deatach deinstall reinstall reattach would seam the solution.


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Message boards : Number crunching : Multiple 5.81 - BOINC_SYMM_FOLD_AND_DOCK_RELAX - crystal_foldanddock errors



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