Problems with Rosetta version 5.51

Author	Message
Gatekeeper Send message Joined: 26 Feb 07 Posts: 4 Credit: 966,551 RAC: 0	Message 37812 - Posted: 14 Mar 2007, 19:16:45 UTC I've had 4 Validate errors on RNA WU's in the last 8 hours. All had very low CPU times. (see WU #'s 60249661, 60260569, 60268231 and 60385171) The error messages are the same as others have posted. Odd..as I VERY seldome have had ANY errors with Rosetta (a pleasant change from SETI (smile)) ID: 37812 · Rating: 0 · rate: / Reply Quote

Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0	Message 37813 - Posted: 14 Mar 2007, 19:29:12 UTC - in response to Message 37812. Hi all: I found the fix for the validate errors (I think!) and will be testing this on RALPH later today. For now, I am no longer sending out any more RNA WU's until everything is fixed. In the meanwhile, you'll have some nice protein workunits to crunch on. Thanks to everyone for posting, and if you're interested, give me feedback on 5.52 on ralph tomorrow! I've had 4 Validate errors on RNA WU's in the last 8 hours. All had very low CPU times. (see WU #'s 60249661, 60260569, 60268231 and 60385171) The error messages are the same as others have posted. Odd..as I VERY seldome have had ANY errors with Rosetta (a pleasant change from SETI (smile)) ID: 37813 · Rating: 0 · rate: / Reply Quote

Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0	Message 37816 - Posted: 14 Mar 2007, 20:16:39 UTC - in response to Message 37813. Good to know this, I just started RNA WU's here and the first one was done in under a hour but showing it computed 6hrs and has a validation error in it. There goes my user average again. sigh But the graphics are cool! Hi all: I found the fix for the validate errors (I think!) and will be testing this on RALPH later today. For now, I am no longer sending out any more RNA WU's until everything is fixed. In the meanwhile, you'll have some nice protein workunits to crunch on. Thanks to everyone for posting, and if you're interested, give me feedback on 5.52 on ralph tomorrow! I've had 4 Validate errors on RNA WU's in the last 8 hours. All had very low CPU times. (see WU #'s 60249661, 60260569, 60268231 and 60385171) The error messages are the same as others have posted. Odd..as I VERY seldome have had ANY errors with Rosetta (a pleasant change from SETI (smile)) ID: 37816 · Rating: 0 · rate: / Reply Quote

Ulrich Metzner Send message Joined: 17 Sep 05 Posts: 22 Credit: 405,640 RAC: 0	Message 37818 - Posted: 14 Mar 2007, 20:31:05 UTC Last modified: 14 Mar 2007, 20:31:33 UTC https://boinc.bakerlab.org/rosetta/result.php?resultid=67218730 This one was unusual short with following output: DONE :: 1 starting structures built 30 (nstruct) times This process generated 0 decoys from 0 attempts greetz, Uli ID: 37818 · Rating: 0 · rate: / Reply Quote

Greg_BE Send message Joined: 30 May 06 Posts: 5691 Credit: 5,859,226 RAC: 0	Message 37822 - Posted: 14 Mar 2007, 21:58:37 UTC whats odd is i see the same thing, but one RNA unit crashed and the other went ok and a third one is crunching now. 1 starting structure and 30 nstruct times and 0 decoys and 0 attempts https://boinc.bakerlab.org/rosetta/result.php?resultid=67120285 - this is ok https://boinc.bakerlab.org/rosetta/result.php?resultid=67185107 - validate error https://boinc.bakerlab.org/rosetta/result.php?resultid=67244663 - this one is ok https://boinc.bakerlab.org/rosetta/result.php?resultid=67311112 - also ok starting last RNA WU. Should be done in about a hour ID: 37822 · Rating: 0 · rate: / Reply Quote

Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0	Message 37824 - Posted: 15 Mar 2007, 1:58:11 UTC - in response to Message 37822. whats odd is i see the same thing, but one RNA unit crashed and the other went ok and a third one is crunching now. 1 starting structure and 30 nstruct times and 0 decoys and 0 attempts ...which is why Rhiju made this post and stopped putting RNA tasks on the queue for the time being. Rosetta Moderator: Mod.Sense ID: 37824 · Rating: 0 · rate: / Reply Quote

Ronald van Butselaar Send message Joined: 26 Jan 07 Posts: 2 Credit: 62,756 RAC: 0	Message 37848 - Posted: 15 Mar 2007, 12:08:07 UTC I got 3 validate errors in the 2 days sinds this new version. before i had never problems. https://boinc.bakerlab.org/rosetta/result.php?resultid=67516356 https://boinc.bakerlab.org/rosetta/result.php?resultid=67514510 https://boinc.bakerlab.org/rosetta/result.php?resultid=67456956 ID: 37848 · Rating: 0 · rate: / Reply Quote

Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0	Message 37849 - Posted: 15 Mar 2007, 12:41:11 UTC - in response to Message 37848. I got 3 validate errors in the 2 days sinds this new version. before i had never problems. https://boinc.bakerlab.org/rosetta/result.php?resultid=67516356 https://boinc.bakerlab.org/rosetta/result.php?resultid=67514510 https://boinc.bakerlab.org/rosetta/result.php?resultid=67456956 Yep, all three of those are the new RNA tasks which are some of the new science that was released in the new version. And these are examples of the validate errors which Rhiju posted that he is now testing a fix for on Ralph. Rosetta Moderator: Mod.Sense ID: 37849 · Rating: 0 · rate: / Reply Quote

WiZMaC Send message Joined: 22 Jun 06 Posts: 4 Credit: 485,344 RAC: 0	Message 37852 - Posted: 15 Mar 2007, 13:22:37 UTC Last modified: 15 Mar 2007, 13:26:52 UTC Hi guys, I am now getting the following errors: https://boinc.bakerlab.org/rosetta/result.php?resultid=67722686 [error] Process 1816 not found Restarting DOCKING_xxxxxxxxxxxxxxxxxxxxxxxxxxxxx_0 - message timeout [error] Process 2110 not found Restarting DOCKING_xxxxxxxxxxxxxxxxxxxxxxxxxxxxx_0 - message timeout What to do? ID: 37852 · Rating: 0 · rate: / Reply Quote

Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0	Message 37861 - Posted: 15 Mar 2007, 18:53:53 UTC - in response to Message 37852. Hmm, I don't know -- I get similar output if my laptop goes to sleep and aborts the run too many times. If that's not the case for you, it may be worth restarting BOINC. Hi guys, I am now getting the following errors: https://boinc.bakerlab.org/rosetta/result.php?resultid=67722686 [error] Process 1816 not found Restarting DOCKING_xxxxxxxxxxxxxxxxxxxxxxxxxxxxx_0 - message timeout [error] Process 2110 not found Restarting DOCKING_xxxxxxxxxxxxxxxxxxxxxxxxxxxxx_0 - message timeout What to do? ID: 37861 · Rating: 0 · rate: / Reply Quote

netwraith Send message Joined: 3 Sep 06 Posts: 80 Credit: 13,483,227 RAC: 0	Message 37882 - Posted: 16 Mar 2007, 12:29:36 UTC I am having another issue with a WU... This one is at 32 hours on a 14 hour maximum.... I am going to abort it as it appears to be stuck (only generating sigalarm's on strace)... https://boinc.bakerlab.org/rosetta/workunit.php?wuid=60408235 *Looking for a team ??? Join BoincSynergy!!* ID: 37882 · Rating: 0 · rate: / Reply Quote

hedera Send message Joined: 15 Jul 06 Posts: 76 Credit: 5,263,150 RAC: 27	Message 37898 - Posted: 17 Mar 2007, 4:14:43 UTC Last modified: 17 Mar 2007, 4:20:05 UTC I can't attach Rosetta at all. I brought my machine up this afternoon around 17:30 PDT and BOINC has had the little red and white circle ever since - it's now 21:14 PDT. I try to attach Rosetta, and put in my password, and nothing happens. Help?? I'd LOVE to be able to test the new graphics. OOPS. Never mind. I've been working with Unix systems too long. I found a post in the Windows section which said, basically, kill BOINC and restart it; so I did, and it connected right up. I do have a Microsoft box at home, after all... sorry. I'll go play with the graphics now. --hedera Never be afraid to try something new. Remember that amateurs built the ark. Professionals built the Titanic. ID: 37898 · Rating: 0 · rate: / Reply Quote

Thomas Leibold Send message Joined: 30 Jul 06 Posts: 55 Credit: 19,627,164 RAC: 0	Message 37927 - Posted: 17 Mar 2007, 18:42:42 UTC I don't think I have seen this one before: <core_client_version>5.4.9</core_client_version> <message> process exited with code 1 (0x1) </message> <stderr_txt> Graphics are disabled due to configuration... # random seed: 1057481 # cpu_run_time_pref: 28800 ERROR:: Exit at: refold.cc line:337 </stderr_txt> This is the 5.51 Rosetta Linux client on workunit 60792243 Team Helix ID: 37927 · Rating: 0 · rate: / Reply Quote

Ulrich Metzner Send message Joined: 17 Sep 05 Posts: 22 Credit: 405,640 RAC: 0	Message 37991 - Posted: 19 Mar 2007, 2:10:24 UTC Invalid: https://boinc.bakerlab.org/rosetta/result.php?resultid=67574739 greetz, Uli ID: 37991 · Rating: 0 · rate: / Reply Quote

Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0	Message 37999 - Posted: 19 Mar 2007, 8:36:36 UTC - in response to Message 37991. Hi all: Long RNA workunit times and validate errors have been fixed and you'll see the benefits during the next update -- I just a couple more days of testing on RALPH with a new app. Invalid: https://boinc.bakerlab.org/rosetta/result.php?resultid=67574739 ID: 37999 · Rating: 0 · rate: / Reply Quote

flying_pizza Send message Joined: 11 Mar 06 Posts: 1 Credit: 64,432 RAC: 0	Message 38010 - Posted: 19 Mar 2007, 14:36:55 UTC - in response to Message 37793. after trying to open the graphics window, my first wu (Workunit 60192061) finished with: <core_client_version>5.8.15</core_client_version> <![CDATA[ <message> - exit code 1073807364 (0x40010004) </message> <stderr_txt> # random seed: 1432142 No heartbeat from core client for 31 sec - exiting </stderr_txt> ]]> 2nd is running right now and the graph worked. I had the same whit WU 60823665. ID: 38010 · Rating: 0 · rate: / Reply Quote