Message boards : Number crunching : Problems with Rosetta version 5.51
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Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Thanks for keeping us posted -- let us know especially how the new graphics are going on your computers! As usual, you can expect occasional download errors on the first day (Monday, March 12) due to high network traffic, but hopefully everything will be running smoothly by Tuesday. |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
RNA task, Validate error: https://boinc.bakerlab.org/rosetta/result.php?resultid=67116185 Viewing the graphic of that one, it seemed to show "initializing", with the strobing periods, long after it appeared to be done initializing. Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Hmm, I'll look into it. RNA task, Validate error: |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
The NEXT RNA task I started also showed "Stage Initializing..." throughout the run. And the protein was MUCH larger. That one that failed looked like it only had about 7 amino acids. I noticed it reports 30 nstructs, but zero decoys, which is the same as that one that someone reported on Ralph with a runtime of < 2seconds. Mine only ran for about 10 minutes. I see now my second RNA task completed: https://boinc.bakerlab.org/rosetta/result.php?resultid=67118019 also 30 nstructs and zero decoys. This one took an hour (24hr preference) and was very complex. Were those WUs preprogrammed to end after 30 nstructs rather then the runtime preference? While we're here... what's the difference between "nstructs" and "decoys" and "attempts" and "models"?? Why are all four terms used? Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
Feet1st Send message Joined: 30 Dec 05 Posts: 1755 Credit: 4,690,520 RAC: 0 |
Following my first RNA task, another host has now crunched it ok... with exactly 30 nstructs. ...but that host is throwing numerous errors on other tasks, and appears it was stable previously. https://boinc.bakerlab.org/rosetta/results.php?hostid=433817 Often with exit -107, and others with these messages every 10 minutes: [03/12/07 13:27:15] TRACE [2964]: Retrieved the required window station [03/12/07 13:27:15] TRACE [2964]: Retrieved the required desktop for example: https://boinc.bakerlab.org/rosetta/result.php?resultid=67068374 Add this signature to your EMail: Running Microsoft's "System Idle Process" will never help cure cancer, AIDS nor Alzheimer's. But running Rosetta@home just might! https://boinc.bakerlab.org/rosetta/ |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Another example of a host with a history of running well, which is now receiving many -107 errors on a variety of task types: https://boinc.bakerlab.org/rosetta/results.php?hostid=269763 [edit] sorry, that host's errors are with v5.48 [/edit] Rosetta Moderator: Mod.Sense |
Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Here were some 5.51 errors that I had been looking for when I posted before. Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x009AE6DE read attempt to address 0x00000002 https://boinc.bakerlab.org/rosetta/result.php?resultid=67170038 and an access violation: https://boinc.bakerlab.org/rosetta/result.php?resultid=67171894 from this host Rosetta Moderator: Mod.Sense |
Iconner Send message Joined: 30 Apr 06 Posts: 3 Credit: 148,980 RAC: 0 |
Two workunits didn't really work for me. they had 30 nstructs, but zero decoys: https://boinc.bakerlab.org/rosetta/result.php?resultid=67231441 https://boinc.bakerlab.org/rosetta/result.php?resultid=67240566 One took about 30 minutes, the other on an hour. Third one running now. Seems to be running well. Graphics are working. |
k6 Send message Joined: 18 Oct 06 Posts: 5 Credit: 1,545,536 RAC: 0 |
The graphics is working well, it´s nice step to make Rosetta more attractive. Another thing is, that the percent bar in the BOINC manager make steps only when one of the models is done. During computing one model, the percent bar doesn´t make any change. Probably it depends on type of WU that i´ve currently computed. So, the rosetta is running well, but percent bar in BOINC keeps the same value for approx 2,5h. Using latest BOINC mngr. (Sory for my bad english.) |
P . P . L . Send message Joined: 20 Aug 06 Posts: 581 Credit: 4,865,274 RAC: 0 |
I've just returned this work its one with RNA in the name it finished early any ideas. https://boinc.bakerlab.org/rosetta/workunit.php?wuid=59971795 cpu_run_time_pref: 36000 ====================================================== DONE :: 1 starting structures built 30 (nstruct) times This process generated 0 decoys from 0 attempts Over Success Done 4,439.00 8.85 13.20 |
Thomas Leibold Send message Joined: 30 Jul 06 Posts: 55 Credit: 19,627,164 RAC: 0 |
All of the RNA workunits processed with Rosetta 5.51 show the same message: DONE :: 1 starting structures built 30 (nstruct) times This process generated 0 decoys from 0 attempts Also all of them are running for much less time then the 8 hours I have in my preferences (range is about 10 minutes to 2 hours). Most of them show a status (outcome/client state) of "Success Done", but there are also some with "Validate Error Done". Those with validation errors also fail the second time they are being assigned to someone else. All of those results are from Rosetta. I never got any 5.51 workunits from Ralph (RNA or otherwise). Team Helix |
Gen_X_Accord Send message Joined: 5 Jun 06 Posts: 154 Credit: 279,018 RAC: 0 |
I have had some work units end early and produce no decoys. I don't know what the problem is, I figure it is with the work unit itself. And I like the new graphics, even if I don't use the screen saver. |
Viromancy Send message Joined: 23 Sep 06 Posts: 8 Credit: 125,713 RAC: 0 |
I've also had multiple validation errors on RNA WUs in 5.51: resultid=67219319 resultid=67284982 resultid=67410504 resultid=67412952 A couple of other RNA WUs have run without errors though: resultid=67253746 resultid=67397280 |
Michael.L Send message Joined: 12 Nov 06 Posts: 67 Credit: 31,295 RAC: 0 |
Result ID 67245211 Result ID 67357866 Both RNA WUs. Both ran for short time. Both no Decoys. |
k6 Send message Joined: 18 Oct 06 Posts: 5 Credit: 1,545,536 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=67170941 https://boinc.bakerlab.org/rosetta/result.php?resultid=67150947 Both RNAs, rans for short time, no decoys. |
B-Roy Send message Joined: 26 Sep 05 Posts: 26 Credit: 46,951 RAC: 0 |
after trying to open the graphics window, my first wu (Workunit 60192061) finished with: <core_client_version>5.8.15</core_client_version> <![CDATA[ <message> - exit code 1073807364 (0x40010004) </message> <stderr_txt> # random seed: 1432142 No heartbeat from core client for 31 sec - exiting </stderr_txt> ]]> 2nd is running right now and the graph worked. |
David Ball Send message Joined: 25 Nov 05 Posts: 25 Credit: 1,439,333 RAC: 0 |
https://boinc.bakerlab.org/rosetta/result.php?resultid=67366016 1esy__BOINC_RNA_ABINITIO-1esy_-_1609_5735_0 CPU time 2009.7416 # random seed: 1591680 # cpu_run_time_pref: 86400 ====================================================== DONE :: 1 starting structures built 30 (nstruct) times This process generated 0 decoys from 0 attempts ====================================================== This has been a very reliable cruncher that's set for 24 hour execution preference. -- David |
AMD_is_logical Send message Joined: 20 Dec 05 Posts: 299 Credit: 31,460,681 RAC: 0 |
I've had about 50 of those WUs that end after a short time with 30 nstruct and zero decoys. Two of these had a "Validate error": https://boinc.bakerlab.org/rosetta/result.php?resultid=67444108 https://boinc.bakerlab.org/rosetta/result.php?resultid=67174628 These were from different machines, and both gave a validate error when crunched by someone else. |
ThorLite Send message Joined: 27 Apr 06 Posts: 1 Credit: 7,110,850 RAC: 0 |
This is the most unstable version on mine quad core.System was rock solid before after 5.51 crashes and blue screens...... |
Rhiju Volunteer moderator Send message Joined: 8 Jan 06 Posts: 223 Credit: 3,546 RAC: 0 |
Hi all: ThorLite, AMD_is_logical, and others: the "0 decoys" is misleading, many of the workunits that you report are producing tons of decoys and getting credit. A small fraction aren't getting credit, though, and I'm tracking those down. I think I know the overall fix, and am working on it over on ralph. I do want to say that the results are streaming in beautifully, and the data is pretty awesome. I'm not entirely sure about the quad core problem, thor -- if you attach your project to ralph part-time, I'll be doing an update soon. I think I know one possible issue with the graphics, and I'll have the fix on the next update. We obviously don't want to lose your machine! Thanks to everybody for posting and crunching! https://boinc.bakerlab.org/rosetta/result.php?resultid=67366016 |
Message boards :
Number crunching :
Problems with Rosetta version 5.51
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