How can I find out what protein my machine is working on?

Message boards : Rosetta@home Science : How can I find out what protein my machine is working on?

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LarryM
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Message 13543 - Posted: 12 Apr 2006, 13:29:09 UTC
Last modified: 12 Apr 2006, 13:44:25 UTC

Is there a way of finding out some information regarding the protein on which my machine is working?
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eberndl
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Message 13545 - Posted: 12 Apr 2006, 13:45:57 UTC

Absolutely there is.

First you have to go to the BOINC manager and get the protein's identifier... I currently have a unit called

ALL_TOPOLOGY_CODES_1vcc_434_295_0

The protein's identifier is 1vcc. Then you can go to the Protein Data Bank and enter in the ID (in the search at the top).

You'll then get a page (like this) which has the protein's name, what species it's from, what kind of protein it is (mine's a topoisomerase!!) and which paper published the crystal structure (or NMR structure).

Hope that helps!


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LarryM
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Message 13546 - Posted: 12 Apr 2006, 14:01:41 UTC - in response to Message 13545.  

Absolutely there is.

First you have to go to the BOINC manager and get the protein's identifier... I currently have a unit called

ALL_TOPOLOGY_CODES_1vcc_434_295_0

The protein's identifier is 1vcc. Then you can go to the Protein Data Bank and enter in the ID (in the search at the top).

You'll then get a page (like this) which has the protein's name, what species it's from, what kind of protein it is (mine's a topoisomerase!!) and which paper published the crystal structure (or NMR structure).

Hope that helps!


Many thanks indeed for your very rapid response.

This is exactly the kind of information I was looking for.

Again thanks my friend and good luck!
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eberndl
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Message 13679 - Posted: 13 Apr 2006, 19:50:53 UTC

No problem Larry... Predictor has that site linked up somewhere, so that's how I found it originally.

But now I have a question for everyone out there... I now have a unit called

7521_largescale_large_fullatom_relax_dec7521_1_39_1.pdb_437_45_0

How do I find out the protein ID on this sucker??

Any ideas?



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Message boards : Rosetta@home Science : How can I find out what protein my machine is working on?



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