Minirosetta 3.54
Message boards : Number crunching : Minirosetta 3.54
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sgaboinc Send message Joined: 2 Apr 14 Posts: 282 Credit: 208,966 RAC: 0 |
minirosetta_3.54_x86_64-pc-linux-gnu Linux 3.11.6 x86_64 GNU/Linux Suse Linux 13.1 Intel(R) Core(TM) i7-4771 CPU @ 3.50GHz ASUS H87-Pro so far so good, no errors after about 20-30 jobs |
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sgaboinc Send message Joined: 2 Apr 14 Posts: 282 Credit: 208,966 RAC: 0 |
foldit_2000402_0000_fold_and_dock_SAVE_ALL_OUT_245631_6672_1 https://boinc.bakerlab.org/rosetta/workunit.php?wuid=655680893 https://boinc.bakerlab.org/rosetta/result.php?resultid=724631548 SIGSEGV: segmentation violation https://boinc.bakerlab.org/rosetta/result.php?resultid=723811914 Unhandled Exception Detected... - Unhandled Exception Record - Reason: Access Violation (0xc0000005) at address 0x00E83207 read attempt to address 0x3F2D1720 -------- errors for this particular task other tasks completed without errors |
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Killersocke@rosetta Send message Joined: 13 Nov 06 Posts: 29 Credit: 2,579,125 RAC: 0 |
Client state: Compute error Workunits: 656971493 Task ID 725226351 656976823 Task ID 725232167 656977330 Task ID 725232713 656985825 Task ID 725241846 656990110 Task ID 725246508 656991178 Task ID 725247675 656992427 Task ID 725249048 656993656 Task ID 725250457 stderr out <core_client_version>7.4.36</core_client_version> <![CDATA[ <message> app_version download error: couldn't get input files: <file_xfer_error> <file_name>minirosetta_3.54_windows_x86_64.exe</file_name> <error_code>-120 (RSA key check failed for file)</error_code> <error_message>signature verification failed</error_message> </file_xfer_error> </message> ]]> Think i'll stop my work :-( |
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jesse1919 Send message Joined: 1 Jul 10 Posts: 8 Credit: 2,680,869 RAC: 0 |
It will not use full CPU time- only ~15%. Have it set at 99% and it usually does that. 8 tasks are "running" however only 1 actually has progress % increasing. So obviously it's only really running one core. I also just upgraded BIONIC to 7.4.36. The tasks no longer show up in the task manager> Processes. No process is > 1% CPU. RAM is OK, 4/6 GB. WIN7-64, I7-940. |
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jesse1919 Send message Joined: 1 Jul 10 Posts: 8 Credit: 2,680,869 RAC: 0 |
It will not use full CPU time- only ~15%. Have it set at 99% and it usually does that. 8 tasks are "running" however only 1 actually has progress % increasing. So obviously it's only really running one core. I also just upgraded BIONIC to 7.4.36. The tasks no longer show up in the task manager> Processes. No process is > 1% CPU. RAM is OK, 4/6 GB. WIN7-64, I7-940. update. I tried World Community Grid tasks and they run to about 1.1% complete and then they reset to 0% complete and 0 time elapsed. This time it is actually using 100% CPU on 8 WCG tasks. Apparently it's not useful work if they keep restarting. So it's definitely a Bionic issue. Been running 24/7 for years...shutting it down. I posted this on the Bionic forum too. |
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Arnaud Send message Joined: 24 Nov 08 Posts: 3 Credit: 301,408 RAC: 0 |
Hello everyone, I wanted to report a problem that I had with the previous version too (3.52). My machine is configured to calculate during the night. But in the morning when I arrive at work, calculations are stopped but minirosetta programs are still in memory (and after a weekend, they take 12GB). Every morning I have to kill them in the task manager. Other projects programs close properly. I am running Windows 8 Pro X64, admin of my machine. Thank you for reading, Arnaud P. |
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Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
Hello everyone, Arnaud, if you run multiple projects, and the BOINC Manager has cycled to the others, then the suspended R@h tasks show on the task list (when you have selected the option for tasks to remain "in memory"). But if BOINC is not actively running the tasks, they are quickly swapped out until they resume. In your case, you may be achieving the same thing by your time of day settings on when to use CPU. But by cancelling the tasks each morning, you are losing everything that has been done since the last checkpoint was reached. Does the existence of these tasks seem to interfere in some way with other work on the machine? Rosetta Moderator: Mod.Sense |
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Arnaud Send message Joined: 24 Nov 08 Posts: 3 Credit: 301,408 RAC: 0 |
Hi David, I unchecked the box to keep them in memory applications (already done). And yes, these tasks bother me when they are in memory as they take (cumulative) many gygabytes of RAM memory (like 12). During the night it does not bother me; During the day, I need all my RAM :) When the BOINC Manager cycles, the other projects (other than Rosetta) close well. I am running Windows 8.1 Pro x64. I have the same problem if I tell the BOINC Manager calculated without taking into account the préférences (during the day for example), and then I told him to follow the preferences. Only Rosetta tasks remain in memory. Other close. Greetings, Arnaud |
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Mod.Sense Volunteer moderator Send message Joined: 22 Aug 06 Posts: 4018 Credit: 0 RAC: 0 |
That sounds like BOINC Manager is not properly removing the application from memory then. But it should not impact the performance of your machine, because when the tasks are not running, the memory gets swapped out to disk. Has anyone heard of such memory allocation issues in BOINC 7.4.36 on Windows 8.1? Rosetta Moderator: Mod.Sense |
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Arnaud Send message Joined: 24 Nov 08 Posts: 3 Credit: 301,408 RAC: 0 |
That sounds like BOINC Manager is not properly removing the application from memory then. But it should not impact the performance of your machine, because when the tasks are not running, the memory gets swapped out to disk. Am I the only one?? :) In the task manager, the memory used by the Rosetta applications is not marked as swapped out to disk. In any case, I found how to solve the problem. It occurs when the application processes a "out of time" request. By removing this requests (I do not know why I have them), the problem no longer occurs. Thanks you for your answers Arnaud |
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svincent Send message Joined: 30 Dec 05 Posts: 219 Credit: 12,120,035 RAC: 0 |
Task 731275755 ( R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0005_fold_and_dock_SAVE_ALL_OUT_263848_834_0 ) got stuck getting no CPU time and I aborted it. Properties were: CPU time at last checkpoint : 8:06 CPU time : 8.39 Elapsed time : 11:55:19 |
 [VENETO] bobovizSend message Joined: 1 Dec 05 Posts: 2014 Credit: 9,839,207 RAC: 3,793 
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A lot of invalid wus like this 731222459 ERROR: std::abs( coordsys_rot.det() - 1.0 ) < 1e-6 ERROR:: Exit from: ......srccoreposesymmetryutil.cc line: 889 |
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GDLS Send message Joined: 11 Mar 15 Posts: 1 Credit: 1,749,464 RAC: 0 |
I have a machine running WU 731205450 and I'm starting to get concerned about it. It's been running this task for about 50 hours and BOINC reports that there are still 665 hours to go. If that's even remotely correct, the deadline (5/4) is in doubt. Do I abort? |
Silverdrake Send message Joined: 9 Oct 11 Posts: 10 Credit: 2,552,771 RAC: 0 |
I installed BOINC 7.4.42 yesterday. This evening when I got on my computer, I found 5 crash tabs for Minirosetta on the task bar. While I was checking the event log, another one popped up. This time, the WU (662459755) errored out completely. Event log contents for Rosetta (sorry for the screen kludge; spoiler tags didn't work): 4/21/2015 2:45:04 PM | | Starting BOINC client version 7.4.42 for windows_x86_64 4/21/2015 2:45:04 PM | | log flags: file_xfer, sched_ops, task 4/21/2015 2:45:04 PM | | Libraries: libcurl/7.39.0 OpenSSL/1.0.1j zlib/1.2.8 4/21/2015 2:45:04 PM | | Data directory: C:ProgramDataBOINC 4/21/2015 2:45:04 PM | | Running under account Dee 4/21/2015 2:45:04 PM | | CUDA: NVIDIA GPU 0: GeForce GT 610 (driver version 344.75, CUDA version 6.5, compute capability 2.1, 1024MB, 933MB available, 156 GFLOPS peak) 4/21/2015 2:45:04 PM | | OpenCL: NVIDIA GPU 0: GeForce GT 610 (driver version 344.75, device version OpenCL 1.1 CUDA, 1024MB, 933MB available, 156 GFLOPS peak) 4/21/2015 2:45:04 PM | | OpenCL CPU: Intel(R) Pentium(R) CPU G645 @ 2.90GHz (OpenCL driver vendor: Intel(R) Corporation, driver version 1.1, device version OpenCL 1.1 (Build 31360.31441)) 4/21/2015 2:45:04 PM | | Host name: Dee-PC 4/21/2015 2:45:04 PM | | Processor: 2 GenuineIntel Intel(R) Pentium(R) CPU G645 @ 2.90GHz [Family 6 Model 42 Stepping 7] 4/21/2015 2:45:04 PM | | Processor features: fpu vme de pse tsc msr pae mce cx8 apic sep mtrr pge mca cmov pat pse36 clflush dts acpi mmx fxsr sse sse2 ss htt tm pni ssse3 cx16 sse4_1 sse4_2 popcnt syscall nx lm vmx tm2 pbe 4/21/2015 2:45:04 PM | | OS: Microsoft Windows 7: Home Premium x64 Edition, Service Pack 1, (06.01.7601.00) 4/21/2015 2:45:04 PM | | Memory: 3.97 GB physical, 7.94 GB virtual 4/21/2015 2:45:04 PM | | Disk: 465.66 GB total, 113.33 GB free 4/21/2015 2:45:04 PM | | Local time is UTC -6 hours 4/21/2015 2:45:04 PM | | VirtualBox version: 4.3.12 4/21/2015 2:45:04 PM | | Config: don't use GPUs while Frozen Throne.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while StarCraft.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while war3.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while Wing Commander Saga.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while Wow.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while Bethesda.net_Launcher.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while launcher.exe is running 4/21/2015 2:45:04 PM | | Config: don't use GPUs while Oblivion.exe is running 4/21/2015 2:45:04 PM | rosetta@home | URL https://boinc.bakerlab.org/rosetta/; Computer ID 1624591; resource share 100 4/21/2015 2:45:04 PM | | Reading preferences override file 4/21/2015 2:45:04 PM | | Preferences: 4/21/2015 2:45:04 PM | | max memory usage when active: 2032.67MB 4/21/2015 2:45:04 PM | | max memory usage when idle: 4065.34MB 4/21/2015 2:45:04 PM | | max disk usage: 7.00GB 4/21/2015 2:45:04 PM | | suspend work if non-BOINC CPU load exceeds 65% 4/21/2015 2:45:04 PM | | (to change preferences, visit a project web site or select Preferences in the Manager) 4/21/2015 2:45:04 PM | | Not using a proxy 4/21/2015 2:45:41 PM | rosetta@home | Sending scheduler request: To report completed tasks. 4/21/2015 2:45:41 PM | rosetta@home | Reporting 1 completed tasks 4/21/2015 2:45:41 PM | rosetta@home | Requesting new tasks for NVIDIA GPU 4/21/2015 2:45:43 PM | rosetta@home | Scheduler request completed: got 0 new tasks 4/21/2015 3:01:38 PM | rosetta@home | Task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0 exited with zero status but no 'finished' file 4/21/2015 3:01:38 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/21/2015 5:51:39 PM | rosetta@home | Task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0 exited with zero status but no 'finished' file 4/21/2015 5:51:39 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/21/2015 6:38:01 PM | rosetta@home | Task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0 exited with zero status but no 'finished' file 4/21/2015 6:38:01 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/21/2015 7:10:42 PM | rosetta@home | Computation for task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0 finished 4/21/2015 7:10:42 PM | rosetta@home | Starting task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_213_0 4/21/2015 7:10:46 PM | rosetta@home | Started upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0_0 4/21/2015 7:10:54 PM | rosetta@home | Finished upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_209_0_0 4/21/2015 8:11:23 PM | rosetta@home | Sending scheduler request: To report completed tasks. 4/21/2015 8:11:23 PM | rosetta@home | Reporting 1 completed tasks 4/21/2015 8:11:23 PM | rosetta@home | Requesting new tasks for NVIDIA GPU 4/21/2015 8:11:29 PM | rosetta@home | Scheduler request completed: got 0 new tasks 4/21/2015 10:21:39 PM | rosetta@home | Task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_213_0 exited with zero status but no 'finished' file 4/21/2015 10:21:39 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/21/2015 10:51:47 PM | rosetta@home | Sending scheduler request: To fetch work. 4/21/2015 10:51:47 PM | rosetta@home | Requesting new tasks for CPU and NVIDIA GPU 4/21/2015 10:51:49 PM | rosetta@home | Scheduler request completed: got 4 new tasks 4/21/2015 10:51:51 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta_FLAGS 4/21/2015 10:51:51 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta.zip 4/21/2015 10:51:54 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta_FLAGS 4/21/2015 10:51:54 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.3mers.gz 4/21/2015 10:52:00 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta.zip 4/21/2015 10:52:00 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.11mers.gz 4/21/2015 10:52:01 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.3mers.gz 4/21/2015 10:52:01 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.8mers.gz 4/21/2015 10:52:38 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.8mers.gz 4/21/2015 10:52:38 PM | rosetta@home | Started download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.5mers.gz 4/21/2015 10:52:41 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.11mers.gz 4/21/2015 10:52:41 PM | rosetta@home | Started download of TL_05370175_0684_2099_0312_0530_0229_0035_0022_0031_0001_0086_1081_0003_0161_0005_2606_0001_031_data.zip 4/21/2015 10:53:00 PM | rosetta@home | Finished download of rb_04_16_55057_100418_ab_stage0_h001___robetta_h001_.200.5mers.gz 4/21/2015 10:53:00 PM | rosetta@home | Started download of fold_and_dock_foldit_2000569_1028_data.zip 4/21/2015 10:53:08 PM | rosetta@home | Finished download of TL_05370175_0684_2099_0312_0530_0229_0035_0022_0031_0001_0086_1081_0003_0161_0005_2606_0001_031_data.zip 4/21/2015 10:53:08 PM | rosetta@home | Started download of foldit_2000569_1028_fold_and_dock_flags 4/21/2015 10:53:09 PM | rosetta@home | Finished download of foldit_2000569_1028_fold_and_dock_flags 4/21/2015 10:53:29 PM | rosetta@home | Finished download of fold_and_dock_foldit_2000569_1028_data.zip 4/21/2015 11:03:48 PM | rosetta@home | Sending scheduler request: To fetch work. 4/21/2015 11:03:48 PM | rosetta@home | Requesting new tasks for NVIDIA GPU 4/21/2015 11:03:49 PM | rosetta@home | Scheduler request completed: got 0 new tasks 4/21/2015 11:11:15 PM | rosetta@home | Computation for task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_213_0 finished 4/21/2015 11:11:15 PM | rosetta@home | Starting task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_08_10_263917_188_0 4/21/2015 11:11:25 PM | rosetta@home | Started upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_213_0_0 4/21/2015 11:11:32 PM | rosetta@home | Finished upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_04_11_263917_213_0_0 4/22/2015 12:12:08 AM | rosetta@home | Sending scheduler request: To report completed tasks. 4/22/2015 12:12:08 AM | rosetta@home | Reporting 1 completed tasks 4/22/2015 12:12:08 AM | rosetta@home | Not requesting tasks: don't need (CPU: not highest priority project; NVIDIA GPU: job cache full) 4/22/2015 12:12:11 AM | rosetta@home | Scheduler request completed 4/22/2015 1:18:04 AM | rosetta@home | Task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_08_10_263917_188_0 exited with zero status but no 'finished' file 4/22/2015 1:18:04 AM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 3:02:13 AM | rosetta@home | Computation for task rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_08_10_263917_188_0 finished 4/22/2015 3:02:13 AM | rosetta@home | Starting task zibochen.helix.control22_fold_and_dock_SAVE_ALL_OUT_251159_1686_1 4/22/2015 3:02:21 AM | rosetta@home | Started upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_08_10_263917_188_0_0 4/22/2015 3:02:33 AM | rosetta@home | Finished upload of rb_04_19_55184_100483_ab_stage0_h002___robetta_IGNORE_THE_REST_08_10_263917_188_0_0 4/22/2015 4:03:03 AM | rosetta@home | Sending scheduler request: To report completed tasks. 4/22/2015 4:03:03 AM | rosetta@home | Reporting 1 completed tasks 4/22/2015 4:03:03 AM | rosetta@home | Not requesting tasks: don't need (CPU: not highest priority project; NVIDIA GPU: job cache full) 4/22/2015 4:03:07 AM | rosetta@home | Scheduler request completed 4/22/2015 11:11:17 AM | rosetta@home | Computation for task zibochen.helix.control22_fold_and_dock_SAVE_ALL_OUT_251159_1686_1 finished 4/22/2015 11:11:17 AM | rosetta@home | Starting task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 4/22/2015 11:11:30 AM | rosetta@home | Started upload of zibochen.helix.control22_fold_and_dock_SAVE_ALL_OUT_251159_1686_1_0 4/22/2015 11:11:53 AM | rosetta@home | Finished upload of zibochen.helix.control22_fold_and_dock_SAVE_ALL_OUT_251159_1686_1_0 4/22/2015 11:34:11 AM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 11:34:11 AM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 11:55:56 AM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 11:55:56 AM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 12:12:25 PM | rosetta@home | Sending scheduler request: To report completed tasks. 4/22/2015 12:12:25 PM | rosetta@home | Reporting 1 completed tasks 4/22/2015 12:12:25 PM | rosetta@home | Not requesting tasks: don't need (CPU: not highest priority project; NVIDIA GPU: job cache full) 4/22/2015 12:12:27 PM | rosetta@home | Scheduler request completed 4/22/2015 12:17:09 PM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 12:17:09 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 12:53:26 PM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 12:53:26 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 1:27:22 PM | | Suspending computation - CPU is busy 4/22/2015 1:27:32 PM | | Resuming computation 4/22/2015 1:50:21 PM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 1:50:21 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 4:14:28 PM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 4:14:28 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 5:07:30 PM | rosetta@home | Task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 exited with zero status but no 'finished' file 4/22/2015 5:07:30 PM | rosetta@home | If this happens repeatedly you may need to reset the project. 4/22/2015 5:46:17 PM | | Suspending computation - CPU is busy 4/22/2015 5:46:27 PM | | Resuming computation 4/22/2015 6:20:18 PM | | Suspending computation - CPU is busy 4/22/2015 6:20:28 PM | | Resuming computation 4/22/2015 7:15:29 PM | rosetta@home | Computation for task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 finished 4/22/2015 7:15:29 PM | rosetta@home | Output file R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0_0 for task R00027_dSASA1633.3_2layerC3SB13_Ttj04_NMdock_0013_0001_A_asu_0_0003_fold_and_dock_SAVE_ALL_OUT_263856_287_0 absent 4/22/2015 7:15:29 PM | rosetta@home | Starting task zibochen.helix.control25_fold_and_dock_SAVE_ALL_OUT_251162_2317_0 4/22/2015 7:29:31 PM | rosetta@home | update requested by user 4/22/2015 7:29:33 PM | rosetta@home | Sending scheduler request: Requested by user. 4/22/2015 7:29:33 PM | rosetta@home | Reporting 1 completed tasks 4/22/2015 7:29:33 PM | rosetta@home | Requesting new tasks for NVIDIA GPU 4/22/2015 7:29:37 PM | rosetta@home | Scheduler request completed: got 0 new tasks While I have frequently had Rosetta WUs cycle through multiple "exited with zero status but no 'finished' file" before completing, I have never had one pop up a program crash tab, much less multiple ones. |
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Trotador Send message Joined: 30 May 09 Posts: 108 Credit: 291,214,977 RAC: 0 |
Task 731275755 Yes same here, those ones do not seem running correctly. |
LigH Send message Joined: 7 Sep 09 Posts: 25 Credit: 9,241,214 RAC: 0 |
Issues here too, with a heap of crash notification dialogs after the night: 24.04.2015 02:39:04 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 02:39:04 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 03:01:56 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 03:01:56 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 03:24:48 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 03:24:48 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 03:47:41 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 03:47:41 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 04:10:32 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 04:10:32 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 04:33:25 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 04:33:25 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 04:56:06 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 04:56:06 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 05:18:48 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 05:18:48 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 05:20:38 | rosetta@home | Task TL_03590726_0415_2119_0169_0549_0114_0058_0025_0050_0001_0275_0167_0005_2204_0001_1960_0001__fold_SAVE_ALL_OUT_259977_515_0 exited with zero status but no 'finished' file 24.04.2015 05:20:38 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 05:41:31 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 05:41:31 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 06:04:32 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 06:04:32 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 06:24:54 | rosetta@home | Task zibochen.helix.1start3_fold_and_dock_SAVE_ALL_OUT_246434_2553_0 exited with zero status but no 'finished' file 24.04.2015 06:24:54 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 06:26:33 | rosetta@home | Task TL_03590726_0415_2119_0169_0549_0114_0058_0025_0050_0001_0275_0167_0005_2204_0001_1960_0001__fold_SAVE_ALL_OUT_259977_515_0 exited with zero status but no 'finished' file 24.04.2015 06:26:33 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 06:27:15 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 06:27:15 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 06:49:57 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 06:49:57 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 07:12:39 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 07:12:39 | rosetta@home | If this happens repeatedly you may need to reset the project. 24.04.2015 07:35:22 | rosetta@home | Task R02027_dSASA1494.4_5L8HC46_Ttj04_NMdock_0005_0001_A_asu_0_0004_fold_and_dock_SAVE_ALL_OUT_263849_196_0 exited with zero status but no 'finished' file 24.04.2015 07:35:22 | rosetta@home | If this happens repeatedly you may need to reset the project. Well ... do I have to reset? CPU: AMD Phenom-II X4 (in case that may be interesting). Fun and success! Jobs: holzon + 12angebote Hobbies: doom9/Gleitz + PlaneShift |
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Betting Slip Send message Joined: 26 Sep 05 Posts: 71 Credit: 5,702,246 RAC: 0 |
Issues here too, with a heap of crash notification dialogs after the night: Reset project, it can't do any harm. |
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Trotador Send message Joined: 30 May 09 Posts: 108 Credit: 291,214,977 RAC: 0 |
Hi all, Thanks for informing us on the issue. This project is about investigation and it is understandable that things some times won't go like it was intented. What we appreciatte is communication from the investigators and that our errors reports are attended. What would be the application of those protein biomaterials? |
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[VENETO] boboviz Send message Joined: 1 Dec 05 Posts: 2014 Credit: 9,839,207 RAC: 3,793
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732848733 ERROR: Can't create a polymer bond after residue 239 due to incompatible type: ALA_p:CtermProteinFull ERROR:: Exit from: ......srccoreconformationConformation.cc line: 643 |
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Gray Handcock Send message Joined: 26 Sep 05 Posts: 20 Credit: 2,018,415 RAC: 0 |
Hello I recently installed Debian Jessie 64-bit on an Intel i7 box with just the basic system tools, Samba and the Boinc-client. This is command-line only - done as a file-server install so no GUI. I am getting a LOT of compute errors - below is just the one page: 735265145 666160586 17 May 2015 17:36:01 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.55 0.05 --- 735264415 666159908 17 May 2015 17:27:45 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 2.22 0.02 --- 735264319 666159812 17 May 2015 17:31:53 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.01 0.03 --- 735263156 666158694 17 May 2015 17:23:33 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.76 0.04 --- 735262945 666158497 17 May 2015 17:19:23 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 2.00 0.02 --- 735262179 666157804 17 May 2015 17:11:07 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 1.01 0.01 --- 735261760 666157386 17 May 2015 17:15:14 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.65 0.05 --- 735261098 666156741 17 May 2015 17:06:59 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.92 0.06 --- 735260316 666156003 17 May 2015 17:02:50 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.76 0.05 --- 735259902 666155598 17 May 2015 16:58:42 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.63 0.05 --- 735259688 666155396 17 May 2015 16:54:34 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.88 0.05 --- 735258808 666154613 17 May 2015 16:50:26 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 3.82 0.04 --- 735258672 666154477 17 May 2015 16:46:18 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 0.80 0.01 --- 735258071 666153955 17 May 2015 16:42:09 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.44 0.05 --- 735257419 666153326 17 May 2015 16:38:00 UTC 17 May 2015 22:37:37 UTC Over Client error Compute error 1.53 0.02 --- 735257050 666153003 17 May 2015 16:33:51 UTC 17 May 2015 22:19:26 UTC Over Client error Downloading 0.00 0.00 --- 735256597 666152571 17 May 2015 16:29:44 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 5.52 0.06 --- 735255994 666152024 17 May 2015 16:21:29 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 0.00 0.00 --- 735255589 666151620 17 May 2015 16:25:36 UTC 17 May 2015 22:19:26 UTC Over Client error Compute error 4.61 0.05 --- Please let me know if I need to provide any other info ? Thanks |
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